[Bug 1033084] [NEW] Please remove arb from the blacklist and sync from Debian unstable (non-free)
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1033084 at bugs.launchpad.net
Sat Aug 4 22:58:50 UTC 2012
You have been subscribed to a public bug by Jeremy Bicha (jbicha):
Please remove arb from the blacklist and sync from Debian unstable (non-
free)
arb was removed (LP: #753168) because it depended on sablotron. That was
fixed in 5.3-1
All changelog entries:
arb (5.3-4) unstable; urgency=low
* debian/upstream: Add citations
* debian/control:
- Build-Depends: libpng-dev instead of libpng12-dev
Closes: #662270
- Standards-Version: 3.9.3 (no changes needed)
* debian/po/nl.po: Add Dutch translation of debconf templates
Thanks for the translation to Jeroen Schot <schot at A-Eskwadraat.nl>
Closes: #654763
* debian/patches/30_Makefile_main:
- Enable gcc-4.7 as well
Closes: #682404
- Enable using hardening flags
* debian/patches/gcc-4.7.patch: Fix gcc-4.7 build issue
* debhelper 9 (control+compat)
* debian/rules:
- Fixed clean target
- propagate hardening flags
-- Andreas Tille <tille at debian.org> Thu, 26 Jul 2012 12:15:21 +0200
arb (5.3-3) unstable; urgency=low
* debian/control:
- Build-Depends: time
Strangely enough this is not needed in local pbnuilder/sbuild
environments but on autobuilders this seems to be a problem
according to comparing the build logs
- Build-Depends: libbio-perl-perl
Otherwise some not-critical checks will fail
* debian/arb.prerm: Care for removal of conffile link created in postinst
Closes: #656035
* debian/rules:
- clean up some manual handling of files and dirs which is not
needed any more with recent versions
- insert check which verifies that binary-indep target is really
builded and changed files and dirs are previousely created
Closes: #658691
-- Andreas Tille <tille at debian.org> Thu, 09 Feb 2012 13:44:22 +0100
arb (5.3-2) unstable; urgency=low
* debian/arb.README.Debian: Dropped molphy related notice
* debian/control:
- Remove Build-Depends: x11proto-print-dev
- Remove at least explicite Build-Depends: libxp-dev
Closes: #623638
* debian/{control,rules}: Remove quilt which is unneeded when
using source format 3.0 (quilt)
* debian/po/ca.po: Catalan translation (thanks to Innocent De Marchi
<tangram.peces at gmail.com>)
Closes: #632206
-- Andreas Tille <tille at debian.org> Thu, 15 Dec 2011 17:00:46 +0100
arb (5.3-1) unstable; urgency=low
[ Nelson A. de Oliveira ]
* Fix FTBFS: replaced sablotron by xsltproc in debian/control
(Closes: #634999)
* Replaced arb dependency on the ssh metapackage by openssh-client only
[ Andreas Tille ]
* New upstream version (including updateing debian/patches/*)
This version doese not depend from molphy any more
* debian/control
- Do not depend from molphy which is removed from Debian any more
- Standards-Version: 3.9.2 (no changes needed)
- Fixed Vcs fields
* Debhelper 8 (control+compat)
* debian/copyright: several DEP5 fixes
-- Andreas Tille <tille at debian.org> Fri, 11 Nov 2011 11:46:22 +0100
arb (5.2-1) unstable; urgency=low
* New upstream version
* Standards-Version: 3.9.1 (no changes needed)
* New debconf translations
- Vietnamese (thanks to Clytie Siddall <clytie at riverland.net.au>)
Closes: #576020
- Danish (thanks to Joe Dalton <joedalton2 at yahoo.dk>)
Closes: #584283
- Brazilian Portuguese (thanks to Gustavo Jordan
<gustavojcbrasil at gmail.com>)
Closes: #596647
* Drop xview-clients Suggests in debian/control and replace any occurence
of textedit (which is part of xview-clients) by editor via
debian/patches/no_xview_dependency.patch
Closes: 612534
* debian/patches/20_Makefiles: clean up some errors in clean target
* debian/patches/20_config.makefiles: Really get the DEB_BUILD_ARCH_BITS
applied
* Build-Depends: time
-- Andreas Tille <tille at debian.org> Wed, 09 Feb 2011 16:56:15 +0100
arb (5.1-1) unstable; urgency=low
[ Andreas Tille ]
* New upstream version
Closes: #522021
* debian/control:
- Package arb-doc in non-free/doc
- Standards-Version: 3.8.4 (Added README.source)
- Build-Depends: dpkg-dev (>= 1.15.4) to make use of
`dpkg-architecture -qDEB_BUILD_ARCH_BITS` in Makefile
- Build-Depends: xutils-dev
- arb Recommends: bioperl
- arb Suggests: phyml
- Build-Depends: openjdk-6-jdk instead of kaffe which might be subject
of removal from Debian in the near future
* Removed / changed patches which were applied upstream
- debian/patches/ARB_release200712_gcc4.3.1.patch removed
- debian/patches/20_replace_rxp_by_xmllint.patch removed
- debian/patches/tmpfile_CVE-2008-5378.patch removed applied part
* debian/{rules,*.install}: Cleanup regarding changes in new upstream version
* debian/arb.README.debian:
- Removed useless warning about prereleases
- Added hint about different phyml versions
* debian/patches/10_gcc_4.4.3.patch: compile with gcc-4.4.3
* debian/rules: Add ARBHOME variable explicitly to clean target
* Added Finish debconf translation (Thanks to Esko Arajärvi <edu at iki.fi>)
Closes: #536516
* Added Galician debconf translation (Thanks to marce
<mvillarino at gmail.com>)
Closes: #537534
* Added Japanese debconf translation (Thankse to Hideki Yamane
<henrich at debian.or.jp>)
Closes: #554882
* Added: Spanish debconf translation (Thanks to Francisco Javier Cuadrado
<fcocuadrado at gmail.com>)
Closes: #573005
* Switch to source format 3.0
[ David Paleino ]
* Removed myself from Uploaders
* New watch file
-- Andreas Tille <tille at debian.org> Tue, 23 Mar 2010 14:37:30 +0100
arb (0.0.20071207.1-7) unstable; urgency=low
* Bumped debhelper to version 7
-> dh_clean -k -> dh_clean; dh_prep
* Standards-Version: 3.8.1 (no changes needed)
* Enhanced package description of arb-common and arb-doc
Closes: #517710
* Added Portuguese translation for debconf messages (thanks to
Traduz <traduz at debianpt.org>)
Closes: #516958
* Added Depends: ${misc:Depends} to all packages
-- Andreas Tille <tille at debian.org> Fri, 20 Mar 2009 08:14:21 +0100
arb (0.0.20071207.1-6) unstable; urgency=low
* Save use of /tmp in arb-kill and addressing the other
potential tempfile symlink attacks reported in
CVE-2008-5378: possible symlink attacks
Closes: #508942
* Use xmllint instead of rxp to verify helpfile XML because
rxp is outdate, unmaintained and should be removed.
* Do not use command-with-path-in-maintainer-script in
postinst and config
* Added Russian debconf translation (Thanks to Yuri Kozlov)
Closes: #511376
-- Andreas Tille <tille at debian.org> Tue, 10 Feb 2009 23:32:41 +0100
arb (0.0.20071207.1-5) unstable; urgency=low
* Fix tempfile issues in upstream scripts
Closes: #496396
* Fix arb name server location in config file (Thanks to
Felipe Figueiredo <philsf79 at gmail.com>)
Closes: #495650
* arb-common.config: Make sure that config file will not fail
when NIS is used
-- Andreas Tille <tille at debian.org> Tue, 23 Sep 2008 13:32:05 +0200
arb (0.0.20071207.1-4) unstable; urgency=low
* debian/arb-common.postrm: Remove stuff arb leaves behind in
/var/lib in case the package is purged
Closes: #463010
* More precise copyright / license statements in debian/copyright
* debian/arb-doc.lintian-overrides: Explain why arb-doc should
not be in section doc
* Moved debian/*.lintian.overrides to *.lintian-overrides and
make use of dh_lintian (includes increasing versioned depends
of debhelper to >= 6.0.7)
* Strip rpath from ARB.so using chrpath
* Better short description which was to generic after [Biology]
marker was removed.
-- Andreas Tille <tille at debian.org> Wed, 23 Jul 2008 08:10:46 +0200
arb (0.0.20071207.1-3) unstable; urgency=low
[ Charles Plessy ]
* Changed the doc-base section according to the new policy.
[ Andreas Tille ]
* Updated dependency from libglew (Build-Depends: libglew-dev ->
libglew1.5-dev)
Closes: #489330
* Standards-Version: 3.8.0 (no changes needed)
* debian/patches/30_Makefile_main: Enable gcc-4.3
* Applied upstream patches to compile with gcc-4.3 (thanks to
Ralf Westram <ralf at arb-home.de>)
-- Andreas Tille <tille at debian.org> Mon, 07 Jul 2008 09:11:40 +0200
arb (0.0.20071207.1-2) unstable; urgency=low
* Added XS-Autobuild: yes to enable autobuilding
* Slightly enhanced description
-- Andreas Tille <tille at debian.org> Thu, 06 Mar 2008 23:23:07 +0100
arb (0.0.20071207.1-1) unstable; urgency=low
[ David Paleino ]
* debian/control:
- Standards-Version 3.7.3
- long lines wrapped
- architecture set to "any" for architecture-dependent packages
- fixed some typos in long descriptions
- removed [Biology] pseudo-tag from short descriptions -- why not
using DebTags?
- updated Vcs-* fields
- added myself to Uploaders
- removing XS- from DM-Upload-Allowed
* debian/watch added
* debian/po/it.po added
* debian/rules updated
[ Andreas Tille ]
* New upstream source
debian/get-orig-source: Obtain official release.
Remark: The originally downloaded source from 2007_12_07 was
different from the currently available one. This is expressed
in the additional ".1" in the version number.
* Removed warning from long description because this is now an
official release
* debian/rules:
- removed get-orig-source.old target
- added missing '-' in clean target
* Switched to quilt (dpatch was not able to apply patches
from previous version)
-- Andreas Tille <tille at debian.org> Mon, 25 Feb 2008 09:34:30 +0100
arb (0.0.20071207-1) unstable; urgency=low
* New upstream version
Closes: #446666
* Added Build-Depends libglew-dev which is needed for 3D version
* Added Build-Depends libxpm4-dev according to the advise of
Charles Plessy <charles-debian-nospam at plessy.org> in bug #364908
* Added x11proto-print-dev, libxpm-dev, libxp-dev,
libgl1-mesa-swx11-dev (> 6.5.1-0.4)
to build dependencies
* Added to Build-Depends: libtiff4-dev, libxaw7-dev
* Standards-Version: 3.7.2 (no changes necessary)
* debhelper 5
* use dpatch
* Added license of new component RAxML to debian/copyright
* Substituded ${Source-Version} by ${source:Version} resp.
${binary:Version}
* debian/arb.menu: Applications/Science/Biology
* move files from lib/* directly to /usr/lib/arb/lib instead of
/usr/share/arb/lib and a bunch of symlinks
* Set maintainer to Maintainer: Debian-Med Packaging Team
<debian-med-packaging at lists.alioth.debian.org>
* Added Portugese debconf translations (thanks to Miguel Figueiredo
<elmig at debianpt.org>
Closes: #341558
* Updated Czech debconf translations (thanks to Jakub Kasparec
<mr.k at centrum.cz>)
Closes: #356713, #392683
* Do not build molphy and symlink to molphy executables instead
* New configuration file format for arb_tcp.dat
* Added Vcs-Browser, Vcs-Svn
* Moved Homepage from long description to tags field
-- Andreas Tille <tille at debian.org> Mon, 05 Nov 2007 18:17:32 +0100
arb (0.0.20050526-7) unstable; urgency=low
* arb-common recommends arb
* Added Build-Depends: g++
* Because there is no sign that this version shows the behaviour
reported in #325640 against the former version and the bug reporter
did not respond to any request I decide to close this bug. Feel
free to reopen if it seems necessary.
Clsoes: #325640
-- Andreas Tille <tille at debian.org> Mon, 21 Nov 2005 14:09:01 +0100
arb (0.0.20050526-6) unstable; urgency=low
* Added transfig to depends
* Removed "Depends: arb" from arb-common to avoid circular dependencies
Closes: #339861
* Added gcc 4.0.3 to supported compilers in Makefile
-- Andreas Tille <tille at debian.org> Wed, 9 Nov 2005 13:17:52 +0100
arb (0.0.20050526-5) unstable; urgency=low
* Enable writing of large amounts of sequence files. (Thanks for
the patch to Elmar Pruesse <elmar at pruesse.net>)
Closes: #333391
* Updated Swedish debconf template (Thanks to Daniel Nylander
<yeager at lidkoping.net>)
Closes: #332788
* Updated French debconf template (Thanks to Jean-Luc Coulon
<jean-luc.coulon at wanadoo.fr>)
Closes: #333108
-- Andreas Tille <tille at debian.org> Wed, 12 Oct 2005 09:25:15 +0200
arb (0.0.20050526-4) unstable; urgency=low
* Included names.dat.template in arb-common:/var/lib/nas
actually not only the file is missing but the directory of the file
is also not found because a link to /var/lib/arb/nas is needed
To enable a clean installation of the link the old empty directory
has to be removed in a preinst script
* Fixed location of arb nameserver in debian/conf/{arb_tcp,arb_ntree}.dat
Closes: #332436
* Make sure that nameserver directory is accessible by members of group
arb in postinst file
* Changed debconf template to ask for arb users
* Added warning to arb wrapper script if the user who starts arb is not
yet member of group arb and thus not allowed to write to /var/lib/arb
-- Andreas Tille <tille at debian.org> Thu, 6 Oct 2005 21:38:12 +0200
arb (0.0.20050526-3) unstable; urgency=low
* Added Swedish debconf templates translation (thanks to
Daniel Nylander <yeager at lidkoping.net>
Closes: #330428
* Added ssh to dependencies because it is used in some scripts
* Dropped last version number in Standards-Version (now: 3.6.2)
-- Andreas Tille <tille at debian.org> Wed, 28 Sep 2005 11:18:17 +0200
arb (0.0.20050526-2) unstable; urgency=low
* Added explicite permission to distribute with Debian to
debian/copyright
* Fixed debian/rules + WINDOW/Makefile to ensure that libARB can be found
in the build process (Many thanks to Petr Salinger <Petr.Salinger at t-systems.cz>)
* Reduced number of architectures to the set that features xviewg-dev
-- Andreas Tille <tille at debian.org> Thu, 8 Sep 2005 14:08:07 +0200
arb (0.0.20050526-1) unstable; urgency=low
* New upstream version.
* Added disclaimer from FTP-download directory to debian/arb.README.Debian
and debian/copyright
* Added parts of the disclaimer from FTP-download directory to
debian/control
* Patch for NAMES/names.cxx (Thanks to Petr Salinger <Petr.Salinger at t-systems.cz>)
-- Andreas Tille <tille at debian.org> Tue, 30 Aug 2005 09:49:01 +0200
arb (0.0.20050506-3) unstable; urgency=low
* Recommend: xfig
* solved debconf | debconf-2.0 issue by ${misc:Depends}
* debian/control: Homepage: http://www.arb-home.de/
* Renamed debian/po/cz.po to cs.po (Thanks to Denis Barbier <barbier at debian.org>)
Closes: #325062
* Depends: freeglut3-dev | libglu-dev
* Build-Depends: libpng12-dev (Thanks to Petr Salinger <Petr.Salinger at t-systems.cz>)
* Some patches that where necessary for building with gcc 4.0.x
(Thanks to Petr Salinger <Petr.Salinger at t-systems.cz>)
* arb-common: Depends: adduser
* arb-common.config: Removed bashism
-- Andreas Tille <tille at debian.org> Fri, 26 Aug 2005 12:58:01 +0200
arb (0.0.20050506-2) unstable; urgency=low
* Enable killing all arb processes in arb-kill
* Standards-Version: 3.6.2.1
* menu items moved (no changes in packaging, just use new debhelper)
* Czech debconf translation, thanks to Igor Jasa <Igor.Jasa at seznam.cz>
Closes: #318442
-- Andreas Tille <tille at debian.org> Wed, 1 Jun 2005 13:15:04 +0200
arb (0.0.20050506-1) unstable; urgency=low
* New upstream version
* Adapted get-orig-source target to new directory layout
* Added French debconf template
Closes: #309222
-- Andreas Tille <tille at debian.org> Mon, 30 May 2005 15:17:44 +0200
arb (0.0.20050318-1) unstable; urgency=low
* New upstream snapshot
* Added freeglut3-dev and libglew-dev Build-dependency
* First official package uploaded to Debian
Closes: #282037
-- Andreas Tille <tille at debian.org> Thu, 10 Mar 2005 11:23:28 +0100
arb (0.0.20041206-1) unstable; urgency=low
* New upstream snapshot
* Reintegrate also arb-nas package because it is the main
Arb application according to the author. It makes no sense
to separate it in an extra package.
-- Andreas Tille <tille at debian.org> Mon, 06 Dec 2004 10:48:01 +0100
arb (0.0.20041112-4) unstable; urgency=low
* Group arb which has rw-permissions to arb databases
* Split configuration file into several pieces and megre them in
postinst. This enables splitting into several independent packages
because upstream uses a single config file
* Script arb-add-pt-server enables users of group arb to add
PT_SERVER entries to configuration files
* Manage users of group arb via debconf
-- Andreas Tille <tille at debian.org> Tue, 23 Nov 2004 12:50:22 +0100
arb (0.0.20041112-3) unstable; urgency=low
* Dropped package arb-extra and abr-server after discussing with the
authors because it does not really make sense to split this from
main package.
* Enhanced package arb-nas
* New package libarb with dynamic libraries
-- Andreas Tille <tille at debian.org> Fri, 19 Nov 2004 15:56:53 +0100
arb (0.0.20041112-2) unstable; urgency=low
* Compile with libmotif-dev because liblesstif has trouble with
some controls in the search inteface.
* Moved some files to the server package.
* Exclude arb/lib/BUGS from package because its irrelevant
* Move arb/lib/help_html to doc package
* Wrote placeholder manpage
* Added lintian.overrides
* Moved arb_tcp.dat to /etc/arb and set symlink
-- Andreas Tille <tille at debian.org> Tue, 16 Nov 2004 18:23:59 +0100
arb (0.0.20041112-1) unstable; urgency=low
* Inoffcial test release.
-- Andreas Tille <tille at debian.org> Fri, 12 Nov 2004 13:15:16 +0100
** Affects: ubuntu
Importance: Wishlist
Status: Confirmed
--
Please remove arb from the blacklist and sync from Debian unstable (non-free)
https://bugs.launchpad.net/bugs/1033084
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