[Bug 1186064] [NEW] python-tables package not usable

registration_for_reporting_bugs_r_u_serious f1440672 at rmqkr.net
Fri May 31 00:40:30 UTC 2013


Public bug reported:

Ubuntu Version:
  raring
  Description:       Ubuntu 13.04
  Release:              13.04

package-version:
  python-tables:
    Installiert:           2.4.0-1ubuntu1
    Installationskandidat: 2.4.0-1ubuntu1
    Versionstabelle:
   *** 2.4.0-1ubuntu1 0
          500 http://archive.ubuntu.com/ubuntu/ raring/universe amd64 Packages
          100 /var/lib/dpkg/status

Expected behaviour:
  No Exceptions on import of the provided python module (tables).

Instead a ValueError occurs:
  ValueError: numpy.dtype has the wrong size, try recompiling

Long description:

after installing the python-tables package it is not possible to import
the tables module (that is provided by the package).

to reproduce just try to run the following code after installing the python-tables package:
  python -c 'import tables'

here the Exception/Output:
----
Traceback (most recent call last):
  File "<string>", line 1, in <module>
  File "/usr/lib/python2.7/dist-packages/tables/__init__.py", line 30, in <module>
    from tables.utilsExtension import getPyTablesVersion, getHDF5Version
  File "numpy.pxd", line 155, in init tables.utilsExtension (tables/utilsExtension.c:14478)
ValueError: numpy.dtype has the wrong size, try recompiling
----

So the problem seems to be related to a wrong numpy version when
compiling python-tables.

A possible hint/workaround: installation of python-tables using pip works fine:
  pip install tables
(you may need a sudo if you're not on a virtualenv)

ProblemType: Bug
DistroRelease: Ubuntu 13.04
Package: python2.7-minimal 2.7.4-2ubuntu3
ProcVersionSignature: Ubuntu 3.8.0-22.33-generic 3.8.11
Uname: Linux 3.8.0-22-generic x86_64
ApportVersion: 2.9.2-0ubuntu8
Architecture: amd64
Date: Fri May 31 02:26:20 2013
ExecutablePath: /usr/bin/python2.7
InstallationDate: Installed on 2011-10-31 (577 days ago)
InstallationMedia: Lubuntu 11.10 "Oneiric Ocelot" - Release amd64 (20111012)
LocalLibraries: /usr/local/lib/python2.7/dist-packages/numpy/lib/_compiled_base.so /usr/local/lib/python2.7/dist-packages/numpy/linalg/lapack_lite.so /usr/local/lib/python2.7/dist-packages/numpy/core/_sort.so /usr/local/lib/python2.7/dist-packages/numpy/fft/fftpack_lite.so /usr/local/lib/python2.7/dist-packages/numpy/core/scalarmath.so /usr/local/lib/python2.7/dist-packages/numpy/core/multiarray.so /usr/local/lib/python2.7/dist-packages/numpy/random/mtrand.so /usr/local/lib/python2.7/dist-packages/numpy/core/umath.so
MarkForUpload: True
SourcePackage: python2.7
UpgradeStatus: Upgraded to raring on 2013-05-23 (7 days ago)

** Affects: pytables (Ubuntu)
     Importance: Undecided
         Status: New


** Tags: amd64 apport-bug local-libs raring

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https://bugs.launchpad.net/bugs/1186064

Title:
  python-tables package not usable

Status in “pytables” package in Ubuntu:
  New

Bug description:
  Ubuntu Version:
    raring
    Description:       Ubuntu 13.04
    Release:              13.04

  package-version:
    python-tables:
      Installiert:           2.4.0-1ubuntu1
      Installationskandidat: 2.4.0-1ubuntu1
      Versionstabelle:
     *** 2.4.0-1ubuntu1 0
            500 http://archive.ubuntu.com/ubuntu/ raring/universe amd64 Packages
            100 /var/lib/dpkg/status

  Expected behaviour:
    No Exceptions on import of the provided python module (tables).

  Instead a ValueError occurs:
    ValueError: numpy.dtype has the wrong size, try recompiling

  Long description:

  after installing the python-tables package it is not possible to
  import the tables module (that is provided by the package).

  to reproduce just try to run the following code after installing the python-tables package:
    python -c 'import tables'

  here the Exception/Output:
  ----
  Traceback (most recent call last):
    File "<string>", line 1, in <module>
    File "/usr/lib/python2.7/dist-packages/tables/__init__.py", line 30, in <module>
      from tables.utilsExtension import getPyTablesVersion, getHDF5Version
    File "numpy.pxd", line 155, in init tables.utilsExtension (tables/utilsExtension.c:14478)
  ValueError: numpy.dtype has the wrong size, try recompiling
  ----

  So the problem seems to be related to a wrong numpy version when
  compiling python-tables.

  A possible hint/workaround: installation of python-tables using pip works fine:
    pip install tables
  (you may need a sudo if you're not on a virtualenv)

  ProblemType: Bug
  DistroRelease: Ubuntu 13.04
  Package: python2.7-minimal 2.7.4-2ubuntu3
  ProcVersionSignature: Ubuntu 3.8.0-22.33-generic 3.8.11
  Uname: Linux 3.8.0-22-generic x86_64
  ApportVersion: 2.9.2-0ubuntu8
  Architecture: amd64
  Date: Fri May 31 02:26:20 2013
  ExecutablePath: /usr/bin/python2.7
  InstallationDate: Installed on 2011-10-31 (577 days ago)
  InstallationMedia: Lubuntu 11.10 "Oneiric Ocelot" - Release amd64 (20111012)
  LocalLibraries: /usr/local/lib/python2.7/dist-packages/numpy/lib/_compiled_base.so /usr/local/lib/python2.7/dist-packages/numpy/linalg/lapack_lite.so /usr/local/lib/python2.7/dist-packages/numpy/core/_sort.so /usr/local/lib/python2.7/dist-packages/numpy/fft/fftpack_lite.so /usr/local/lib/python2.7/dist-packages/numpy/core/scalarmath.so /usr/local/lib/python2.7/dist-packages/numpy/core/multiarray.so /usr/local/lib/python2.7/dist-packages/numpy/random/mtrand.so /usr/local/lib/python2.7/dist-packages/numpy/core/umath.so
  MarkForUpload: True
  SourcePackage: python2.7
  UpgradeStatus: Upgraded to raring on 2013-05-23 (7 days ago)

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