New message when copying file?

[Knute Johnson]

I've got a script that does some backup at night and copies my apache 
configuration files to a usb flash drive.  Since I upgraded from 
12.04LTS to 14.04LTS I'm getting a message in the script return that 
shows the following;

WARN: Duplicate profile 'Apache', using last found
WARN: Duplicate profile 'Apache Secure', using last found
WARN: Duplicate profile 'Apache Full', using last found

Anybody know what causes this and how do I get rid of the duplicate?

Thanks,

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Knute Johnson