[Bug 2062071] Re: gff2gff.py crashed with ModuleNotFoundError in Noble

Bug Watch Updater 2062071 at bugs.launchpad.net
Thu Apr 18 14:57:23 UTC 2024


** Changed in: bcftools (Debian)
       Status: Unknown => New

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https://bugs.launchpad.net/bugs/2062071

Title:
  gff2gff.py crashed with ModuleNotFoundError in Noble

Status in bcftools package in Ubuntu:
  Confirmed
Status in bcftools package in Debian:
  New

Bug description:
  gff2gff.py fails to run with the error:

  $ gff2gff.py 
  Traceback (most recent call last):
    File "/usr/bin/gff2gff.py", line 13, in <module>
      import gffutils
  ModuleNotFoundError: No module named 'gffutils'

  ProblemType: Crash
  DistroRelease: Ubuntu 24.04
  Package: bcftools 1.19-1build2
  ProcVersionSignature: Ubuntu 6.8.0-22.22-generic 6.8.1
  Uname: Linux 6.8.0-22-generic x86_64
  ApportVersion: 2.28.0-0ubuntu1
  Architecture: amd64
  CasperMD5CheckResult: pass
  CurrentDesktop: ubuntu:GNOME
  Date: Wed Apr 17 22:16:25 2024
  ExecutablePath: /usr/bin/gff2gff.py
  InstallationDate: Installed on 2024-04-10 (7 days ago)
  InstallationMedia: Ubuntu 24.04 LTS "Noble Numbat" - Beta amd64 (20240410)
  InterpreterPath: /usr/bin/python3.12
  JournalErrors:
   Apr 17 22:16:19 hostname org.gnome.Characters[2202]: MESA: error: ZINK: failed to choose pdev
   Apr 17 22:16:19 hostname org.gnome.Characters[2202]: libEGL warning: egl: failed to create dri2 screen
  ProcCmdline: python3 /usr/bin/gff2gff.py
  Python3Details: /usr/bin/python3.12, Python 3.12.3, python3-minimal, 3.12.3-0ubuntu1
  PythonArgs: ['/usr/bin/gff2gff.py']
  PythonDetails: N/A
  SourcePackage: bcftools
  Title: gff2gff.py crashed with ModuleNotFoundError in __main__: No module named 'gffutils'
  Traceback:
   Traceback (most recent call last):
     File "/usr/bin/gff2gff.py", line 13, in <module>
       import gffutils
   ModuleNotFoundError: No module named 'gffutils'
  UpgradeStatus: No upgrade log present (probably fresh install)
  UserGroups: adm cdrom dip lpadmin plugdev sudo users

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