[Bug 1828159] Re: Sync hmmer 3.2.1+dfsg-1 (universe) from Debian unstable (main)

[Graham Inggs]

Version 3.2.1 now FTBFS on unsupported architectures during configure,
so there is no point in trying to apply the Ubuntu delta.

e.g. (on arm64)

configure: ::::::::::--- no vector instruction set ---::::::::::
configure: HMMER3 requires SSE or VMX vector instructions.
configure: Supported platforms are x86 (Intel/AMD) and PowerPC.
configure: error: No supported vectorization found for your machine.

and (on ppc64el)

configure: ::::::::::--- no vector instruction set ---::::::::::
configure: HMMER3 Altivec/VMX only supports bigendian platforms: e.g.
ppc64 not ppc64le
configure: error: No supported vectorization found for your machine.

** Changed in: hmmer (Ubuntu)
       Status: New => Fix Released

-- 
You received this bug notification because you are a member of Ubuntu
Sponsors Team, which is subscribed to the bug report.
https://bugs.launchpad.net/bugs/1828159

Title:
  Sync hmmer 3.2.1+dfsg-1 (universe) from Debian unstable (main)

Status in hmmer package in Ubuntu:
  Fix Released

Bug description:
  Please sync hmmer 3.2.1+dfsg-1 (universe) from Debian unstable (main)

  Explanation of the Ubuntu delta and why it can be dropped:
    * Sync on Debian unstable.  Remaining changes:
      - Enable altivec on powerpc/ppc64el
      - Enable arch:any builds

  You can drop the delta because ppc64el is not supported by the hmmer3
  devs (see [1] p.19).

  I have re-enabled builds for powerpc [2] and ppc64 [3] (both are
  supported by upstream [1]). It will be uploaded in Debian after the
  current freeze, but I think it is not useful to keep a delta here only
  for not official arches (powerpc and ppc64).

  [1] http://eddylab.org/software/hmmer/Userguide.pdf
  [2] https://salsa.debian.org/med-team/hmmer/commit/cc7071c346d9b756a97aef1f76bcf43260fca7a2
  [3] https://salsa.debian.org/med-team/hmmer/commit/42f2718a6e99d097264d46a335dd8fe964016955

  
  Changelog entries since current eoan version 3.1b2+dfsg-5ubuntu1:

  hmmer (3.2.1+dfsg-1) unstable; urgency=medium

    [ Andreas Tille ]
    * Fix watch file
    * New upstream version
    * debhelper 11
    * Point Vcs fields to salsa.debian.org
    * Standards-Version: 4.2.0
    * Adapt doc-base control file to new location of doc
    * d/rules:
       - Respect DEB_BUILD_OPTIONS in override_dh_auto_test
       - Do not parse d/changelog
       - Fix permission of manpage

    [ Dylan Aïssi ]
    * Fix OMICtools ID and replace RRID by SciCrunch

   -- Andreas Tille <tille at debian.org>  Fri, 24 Aug 2018 08:48:36 +0200

To manage notifications about this bug go to:
https://bugs.launchpad.net/ubuntu/+source/hmmer/+bug/1828159/+subscriptions