[Bug 2002660] Re: networkx incompatible with numpy 1.24

[Launchpad Bug Tracker]

This bug was fixed in the package networkx - 2.8.8-1ubuntu1

---------------
networkx (2.8.8-1ubuntu1) lunar; urgency=low

  * Merge from Debian unstable (LP: #2002660).  Remaining changes:
    - d/control: Lower Recommends to Suggests for some universe packages.
  * Dropped changes, superseded upstream:
    - d/control: Depend on nb2plots>=0.6-2ubuntu1 which includes a py310 fix.
    - d/p/fix-Sphinx-deprecation.patch,
      d/p/use-xetex-for-uft8-latex-backend-4326.patch: Cherry-picked from
      upstream to fix sphinx failures.
    - d/control: Add fonts-freefont-otf, texlive-xetex, and xindy BDs.

networkx (2.8.8-1) unstable; urgency=medium

  * New upstream release; Closes: #1025052
  * stop building the -doc package (including dropping all patches)
  * debian/copyright
    - extend packaging copyright years
    - update upstream copyright years
  * debian/control
    - bump Standards-Version to 4.6.2.0 (no changes needed)
  * debian/rules
    - run tests using pybuild

networkx (2.6.3-1) unstable; urgency=medium

  * New upstream release
  * Use the new Debian Python Team contact name and address
  * debian/watch
    - track github releases
  * debian/copyright
    - update upstream copyright years
    - extend packaging copyright years
  * debian/patches/*
    - refresh/update patches
  * debian/control
    - merge b-d and b-d-i
    - add pydata-sphinx-theme to b-d, needed to build doc
    - tighten up b-d on modules needed to build doc
    - add geopandas, igraph, osmnx, seaborn, texlive-xetex, xindy,
      fonts-freefont-otf to b-d, needed by doc
  * debian/patches/docs-ignore-examples-missing-modules.patch
    - ignore some examples which needs modules not in debian
  * debian/rules
    - dont install news.rst as changelog, removed upstream

networkx (2.5+ds-2) unstable; urgency=medium

  [ Ondřej Nový ]
  * d/control: Update Vcs-* fields with new Debian Python Team Salsa
    layout.

  [ Sandro Tosi ]
  * Undo changes made in -1 that were not OK
  * debian/copyright
    - update upstream copyright years
    - extend packaging copyright years
  * debian/patches/2bfdee687d0db533555384f92ce3670d47c45aec.patch
    - fix a failure in botch tests; Closes: #969756

  [ Debian Janitor ]
  * Trim trailing whitespace.
  * Use secure URI in Homepage field.
  * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
    Repository-Browse.

networkx (2.5+ds-1) unstable; urgency=medium

  * Team upload.
  * New upstream version
  * Rules-Requires-Root: no
  * debhelper-compat 13 (routine-update)
  * Override of dh_missing which gets confused over installation of
    /usr/lib/python3.8 to /usr/lib/python3
    which I feel should be fixed.
  * Remove files from archive that are changed during build

 -- Steve Langasek <steve.langasek at ubuntu.com>  Thu, 12 Jan 2023
23:50:54 -0800

** Changed in: networkx (Ubuntu)
       Status: Fix Committed => Fix Released

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https://bugs.launchpad.net/bugs/2002660

Title:
  networkx incompatible with numpy 1.24

Status in networkx package in Ubuntu:
  Fix Released
Status in nipype package in Ubuntu:
  Invalid
Status in python3-defaults package in Ubuntu:
  New

Bug description:
  The nipype autopkgtests have started failing with the following stack
  trace:

  ____________ ERROR collecting pipeline/plugins/tests/test_tools.py _____________
  /usr/lib/python3.10/importlib/__init__.py:126: in import_module
      return _bootstrap._gcd_import(name[level:], package, level)
  <frozen importlib._bootstrap>:1050: in _gcd_import
      ???
  <frozen importlib._bootstrap>:1027: in _find_and_load
      ???
  <frozen importlib._bootstrap>:992: in _find_and_load_unlocked
      ???
  <frozen importlib._bootstrap>:241: in _call_with_frames_removed
      ???
  <frozen importlib._bootstrap>:1050: in _gcd_import
      ???
  <frozen importlib._bootstrap>:1027: in _find_and_load
      ???
  <frozen importlib._bootstrap>:992: in _find_and_load_unlocked
      ???
  <frozen importlib._bootstrap>:241: in _call_with_frames_removed
      ???
  <frozen importlib._bootstrap>:1050: in _gcd_import
      ???
  <frozen importlib._bootstrap>:1027: in _find_and_load
      ???
  <frozen importlib._bootstrap>:1006: in _find_and_load_unlocked
      ???
  <frozen importlib._bootstrap>:688: in _load_unlocked
      ???
  <frozen importlib._bootstrap_external>:883: in exec_module
      ???
  <frozen importlib._bootstrap>:241: in _call_with_frames_removed
      ???
  nipype/pipeline/plugins/__init__.py:5: in <module>
      from .debug import DebugPlugin
  nipype/pipeline/plugins/debug.py:7: in <module>
      import networkx as nx
  /usr/lib/python3/dist-packages/networkx/__init__.py:115: in <module>
      import networkx.readwrite
  /usr/lib/python3/dist-packages/networkx/readwrite/__init__.py:15: in <module>
      from networkx.readwrite.graphml import *
  /usr/lib/python3/dist-packages/networkx/readwrite/graphml.py:314: in <module>
      class GraphML(object):
  /usr/lib/python3/dist-packages/networkx/readwrite/graphml.py:346: in GraphML
      (np.int, "int"), (np.int8, "int"),
  /usr/lib/python3/dist-packages/numpy/__init__.py:284: in __getattr__
      raise AttributeError("module {!r} has no attribute "
  E   AttributeError: module 'numpy' has no attribute 'int'

  The problematic code is in the networkx package, and seems to have
  been fixed in
  https://github.com/networkx/networkx/commit/207147ee179554a33f10f25032054d3e01f96188
  (which is in 2.5 onwards).

  Debian currently ships with 2.8.8, we might want to merge?

  This is currently blocking the python3-defaults transition.

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