[Bug 326884] [NEW] Please sync gromacs 4.0.3-1 (universe) from Debian unstable (main).
Launchpad Bug Tracker
326884 at bugs.launchpad.net
Sun Feb 8 15:15:00 GMT 2009
You have been subscribed to a public bug by Morten Kjeldgaard (mok0):
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
affects ubuntu/gromacs
status new
importance wishlist
subscribe ubuntu-universe-sponsors
Please sync gromacs 4.0.3-1 (universe) from Debian unstable (main).
Explanation of the Ubuntu delta and why it can be dropped:
Ubuntu changes by James Westby to use autoreconf has been incorporated by Debian. There are no outstanding Ubuntu changes.
Changelog since current jaunty version 4.0.2-1ubuntu1:
gromacs (4.0.3-1) unstable; urgency=low
* New upstream release.
* Remove obsoleted patches 40, 41, 50, 51, 52.
-- Nicholas Breen <nbreen at ofb.net> Mon, 19 Jan 2009 13:35:23 -0800
gromacs (4.0.2-2) unstable; urgency=low
* debian/*.postinst: Resort update-alternatives priorities for the MPI
packages to follow the newly proposed priorities of the individual
MPI implementations themselves, OpenMPI > MPICH > LAM.
* New patches:
- 40_hppa_asm.dpatch: Attempt to correct FTBFS on HPPA
inline ASM code by replacing an undefined variable.
(cf. http://bugzilla.gromacs.org/show_bug.cgi?id=260)
- 41_sprintf.dpatch: Replace sprintf calls relying on undefined
behavior with proper, portable code. Problem identified by Kees
Cook: http://lists.debian.org/debian-devel/2008/12/msg01079.html
- 50_type2bonds.dpatch: Fix grompp freeze when using type 2 bonds
(G96) and all-angle constraints.
(cf. http://bugzilla.gromacs.org/show_bug.cgi?id=261)
- 51_mshift.dpatch: When running mdrun on multiple processors, it
will crash under certain circumstances when an error is generated
but there is no log file attached to that specific process. This
was triggered by some incorrect "inconsistent shift" warning
messages. Both problems are corrected by this patch.
(cf. http://bugzilla.gromacs.org/show_bug.cgi?id=267)
- 52_ia64_single_pointer.dpatch: Test for non-zero pointer in IA64
single-precision kernel when writing to log file. Pointer is
zero on non-master MPI processes, and would previously segfault.
(cf. http://bugzilla.gromacs.org/show_bug.cgi?id=262)
* debian/rules: Use autoreconf in lieu of automake&&autoconf&&... to
avoid version skew. Thanks to James Westby for the patch.
-- Nicholas Breen <nbreen at ofb.net> Mon, 19 Jan 2009 10:42:26 -0800
-----BEGIN PGP SIGNATURE-----
Version: GnuPG v1.4.9 (GNU/Linux)
iEYEARECAAYFAkmO5OMACgkQ6TNQLpzl0GRfegCfZw+llKfmG6dP2UOCjDAfLqz9
/T0AnRnqXSFZsv88NhDmFHtQ0LKDip5B
=vQ2k
-----END PGP SIGNATURE-----
** Affects: gromacs (Ubuntu)
Importance: Wishlist
Status: New
--
Please sync gromacs 4.0.3-1 (universe) from Debian unstable (main).
https://bugs.edge.launchpad.net/bugs/326884
You received this bug notification because you are a member of Ubuntu Package Archive Administrators, which is a direct subscriber.
More information about the ubuntu-archive
mailing list