[Bug 2063981] Re: Noble Numbat distribution upgrade failure too many errors

Mon Jun 3 18:34:49 UTC 2024

I have also faced the same issue after upgrading from Ubuntu 23.10 to
Ubuntu 24.04. In my case, the issue is resolved after using the
following commands.

1. To remove the problematic package and its dependencies

      $ sudo apt-get remove --purge libeccodes-data

      $ sudo apt-get autoremove

2. Update the package list

      $ sudo apt-get update

3. Install the package manually

      $ sudo apt-get install libeccodes-data

4. Install the dependencies of that package

      $ sudo apt-get install gnudatalanguage libeccodes0
libgnudatalanguage0

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https://bugs.launchpad.net/bugs/2063981

Title:
  Noble Numbat distribution upgrade failure too many errors

Status in ubuntu-release-upgrader package in Ubuntu:
  Incomplete

Bug description:
  Environment: Ubuntu 23.10 mantic LTS, wayland, macpro 2013 trashcan,
  luks2 encrypted lvm, gnome 45, kernel Linux 6.5.0-28-generic,

  Upgrading from 23.10, April 27th 2024, via terminal using do-
  distribution-upgrade -d results in too many errors and upgrades fail:

  running "do-distribution-upgrade -d" will fail:

  dpkg: error processing package gnome-keyring (--configure):
   dependency problems - leaving unconfigured
  dpkg: too many errors, stopping
  Processing triggers for dictionaries-common (1.29.7) ...
  Processing triggers for libc-bin (2.39-0ubuntu8) ...
  Errors were encountered while processing:
   libcairo-script-interpreter2:amd64
   libucx0:amd64
   libice-dev:amd64
   libsm-dev:amd64
   sfftw2
   libfftw3-mpi3:amd64
   dbus-daemon
   dbus-user-session
   fftw2
   libdbus-1-dev:amd64
   dbus
   sfftw-dev
   avahi-daemon
   dbus-x11
   gdm3
   libgtk-4-1:amd64
   libpam-systemd:amd64
   language-selector-common
   libcairo2-dev:amd64
   libgtk2.0-dev:amd64
   libgoa-backend-1.0-2:amd64
   fftw-dev
   nautilus
   libpolkit-qt5-1-1:amd64
   dbus-bin
   polkitd
   accountsservice
   libportal-gtk4-1:amd64
   budgie-control-center
   gnome-clocks
   libcanberra-gtk-dev:amd64
   systemd-resolved
   libgtkmm-2.4-dev:amd64
   budgie-session
   gir1.2-gtk-4.0:amd64
   gnome-terminal
   libkf5authcore5:amd64
   xdg-desktop-portal-gtk
   libatspi2.0-dev:amd64
   language-selector-gnome
   libgtk-3-dev:amd64
   tracker
   udisks2
   gir1.2-gnomebg-4.0:amd64
   gnome-control-center
   xdg-desktop-portal
   libapache2-mod-dnssd
   libnma-gtk4-0:amd64
   libkf5configwidgets5:amd64
   gnome-keyring
  Processing was halted because there were too many errors.

  after "apt --fix-broken-install" another failure is encountered:

  Unpacking usb-modeswitch (2.6.1-3ubuntu3) over (2.6.1-3ubuntu2) ...
  Errors were encountered while processing:
   /tmp/apt-dpkg-install-RPCtCO/388-libeccodes-data_2.34.1-1build2_all.deb
  E: Sub-process /usr/bin/dpkg returned an error code (1)

  after "apt full-upgrade" another failure is encountered:

  Preparing to unpack .../5-libeccodes-data_2.34.1-1build2_all.deb ...
  Unpacking libeccodes-data (2.34.1-1build2) over (2.31.1-1) ...
  dpkg: error processing archive /tmp/apt-dpkg-install-JUWoUK/5-libeccodes-data_2.34.1-1build2_all.deb (--unpack):
   unable to open '/usr/share/eccodes/definitions/bufr/tables/0/local/8/78/1/codetables/11199.table.dpkg-new': No such file or directory
  No apport report written because the error message indicates an issue on the local system
                                                                                           Preparing to unpack .../6-libodc-0d_1.5.0-2_amd64.deb ...
  Unpacking libodc-0d:amd64 (1.5.0-2) over (1.4.6-5) ...
  Errors were encountered while processing:
   /tmp/apt-dpkg-install-JUWoUK/5-libeccodes-data_2.34.1-1build2_all.deb
  E: Sub-process /usr/bin/dpkg returned an error code (1)

  and after again running "apt --fix-broken-install" it succeeds:

  a splash appears and it states that grub-efi-amd64 grub boot loader
  was previously installed to a disk that is no longer present, which is
  odd since it is the disk lvm I am installing ubuntu on, I continue by
  selecting /dev/nvme0n1p1

  and after running "apt update/full-upgrade" again it fails:

  (Reading database ... 393989 files and directories currently installed.)
  Preparing to unpack .../libeccodes-data_2.34.1-1build2_all.deb ...
  Unpacking libeccodes-data (2.34.1-1build2) over (2.31.1-1) ...
  dpkg: error processing archive /var/cache/apt/archives/libeccodes-data_2.34.1-1build2_all.deb (--unpack):
   unable to open '/usr/share/eccodes/definitions/bufr/tables/0/local/8/78/1/codetables/11199.table.dpkg-new': No such file or directory
  No apport report written because the error message indicates an issue on the local system
                                                                                           Errors were encountered while processing:
   /var/cache/apt/archives/libeccodes-data_2.34.1-1build2_all.deb
  E: Sub-process /usr/bin/dpkg returned an error code (1)

  and after running "apt --fix-broken-install" and "apt autoremove -y" and "sudo dpkg -i --force-overwrite /var/cache/apt/archives/libeccodes-data_2.34.1-1build2_all.deb" still fails:

  Use 'sudo apt autoremove' to remove them.
  0 upgraded, 0 newly installed, 0 to remove and 2 not upgraded.
  (Reading database ... 386053 files and directories currently installed.)
  Preparing to unpack .../libeccodes-data_2.34.1-1build2_all.deb ...
  Unpacking libeccodes-data (2.34.1-1build2) over (2.31.1-1) ...
  dpkg: error processing archive /var/cache/apt/archives/libeccodes-data_2.34.1-1build2_all.deb (--install):
   unable to open '/usr/share/eccodes/definitions/bufr/tables/0/local/8/78/1/codetables/11199.table.dpkg-new': No such file or directory
  Errors were encountered while processing:
   /var/cache/apt/archives/libeccodes-data_2.34.1-1build2_all.deb

  The following cannot be upgraded:

  sudo apt list --upgradable
  Listing... Done
  libeccodes-data/noble,noble 2.34.1-1build2 all [upgradable from: 2.31.1-1]
  mesa-opencl-icd/noble 24.0.5-1ubuntu1 amd64 [upgradable from: 24.0.3+git2403140111.90dcd95c0e7~m~mesarc5]

  after purging mesa-opencl* and re-installing it and purging libcc* and
  re-installing it these packages install.

  Also reinstalled and enabled gdm3 service since it got stuck at boot
  last three times I tried, prior to reboot.

  With the failed upgrade restarting the computer will result in a hang and fail to load the gdm.service and system will be unusable.

  ProblemType: Bug
  DistroRelease: Ubuntu 23.10
  Package: ubuntu-release-upgrader-core 1:24.04.16
  ProcVersionSignature: Ubuntu 6.5.0-28.29-generic 6.5.13
  Uname: Linux 6.5.0-28-generic x86_64
  NonfreeKernelModules: vboxnetadp vboxnetflt vboxdrv wl
  ApportVersion: 2.27.0-0ubuntu5
  Architecture: amd64
  CasperMD5CheckResult: unknown
  CrashDB: ubuntu
  CrashReports: 644:0:0:1389891:2024-04-27 21:11:23.978236133 -0700:2024-04-27 21:11:23.922238433 -0700:/var/crash/libeccodes-data.0.crash
  CurrentDesktop: ubuntu:GNOME
  Date: Sat Apr 27 21:14:12 2024
  PackageArchitecture: all
  ProcEnviron:
   LANG=en_US.UTF-8
   PATH=(custom, no user)
   SHELL=/bin/bash
   XDG_RUNTIME_DIR=<set>
  RebootRequiredPkgs: Error: path contained symlinks.
  SourcePackage: ubuntu-release-upgrader
  Symptom: dist-upgrade
  UpgradeStatus: Upgraded to mantic on 2024-04-28 (0 days ago)
  VarLogDistupgradeAptclonesystemstate.tar.gz: Error: command ['pkexec', 'cat', '/var/log/dist-upgrade/apt-clone_system_state.tar.gz'] failed with exit code 127: pkexec must be setuid root
  VarLogDistupgradeXorgFixuplog:
   INFO:root:/usr/bin/do-release-upgrade running
   INFO:root:No xorg.conf, exiting

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