[Bug 756147] Re: pymol 1.2r2-1.1build1 ftbfs (ICE in set_jump_prob, at stmt.c:2319)

Brian Murray brian at ubuntu.com
Thu May 26 19:06:59 UTC 2011


** Changed in: pymol (Ubuntu Oneiric)
    Milestone: oneiric-alpha-1 => oneiric-alpha-2

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https://bugs.launchpad.net/bugs/756147

Title:
  pymol 1.2r2-1.1build1 ftbfs (ICE in set_jump_prob, at stmt.c:2319)

Status in “gcc-4.5” package in Ubuntu:
  Confirmed
Status in “pymol” package in Ubuntu:
  Confirmed
Status in “gcc-4.5” source package in Oneiric:
  Confirmed
Status in “pymol” source package in Oneiric:
  Confirmed

Bug description:
  pymol version 1.2r2-1.1build1 failed to build on i386
  Link to failed build: https://launchpad.net/ubuntu/+archive/test-rebuild-20110329/+buildjob/2408152

  Direct link to the build log: https://launchpad.net/ubuntu/+archive
  /test-rebuild-20110329/+buildjob/2408152/+files/buildlog_ubuntu-
  natty-i386.pymol_1.2r2-1.1build1_FAILEDTOBUILD.txt.gz

  This log snippet might be of interest, since it triggered the matcher 'Purging chroot-autobuild'.
  Excerpt 1680 lines into the build log:

  /usr/include/features.h:214:0: note: this is the location of the previous definition
  gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -O2 -fPIC -D_PYMOL_MODULE -D_PYMOL_INLINE -D_PYMOL_FREETYPE -D_PYMOL_LIBPNG -D_PYMOL_OPENGL_SHADERS -D_PYMOL_VMD_PLUGINS -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 -Ilayer4 -Ilayer5 -I/usr/include/freetype2 -Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src -I/usr/include/python2.7 -c layer1/Scene.c -o build/temp.linux-i686-2.7/layer1/Scene.o -ffast-math -funroll-loops -O3
  In file included from /usr/include/python2.7/Python.h:8:0,
                   from layer0/os_python.h:30,
                   from layer1/Scene.c:21:
  /usr/include/python2.7/pyconfig.h:1155:0: warning: "_POSIX_C_SOURCE" redefined
  /usr/include/features.h:214:0: note: this is the location of the previous definition
  layer1/Scene.c: In function 'SceneClick':
  layer1/Scene.c:4557:11: internal compiler error: in set_jump_prob, at stmt.c:2319
  Please submit a full bug report,
  with preprocessed source if appropriate.
  See <file:///usr/share/doc/gcc-4.5/README.Bugs> for instructions.
  error: command 'gcc' failed with exit status 1
  make: *** [build-stamp] Error 1
  dpkg-buildpackage: error: debian/rules build gave error exit status 2
  ******************************************************************************
  Build finished at 20110408-1521
  FAILED [dpkg-buildpackage died]
  Purging chroot-autobuild/build/buildd/pymol-1.2r2




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